STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_2498LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (329 aa)    
Predicted Functional Partners:
LT85_0023
Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.743
LT85_0556
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.742
LT85_3013
Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.739
LT85_1070
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.733
LT85_1795
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.719
LT85_1306
Putative transcriptional regulator lrhA; Belongs to the LysR transcriptional regulatory family.
  
     0.717
LT85_1362
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.717
LT85_4971
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.711
ybhD
LysR family transcriptional regulator YbhD; Belongs to the LysR transcriptional regulatory family.
  
     0.678
cysB
Cys regulon transcriptional activator CysB; Belongs to the LysR transcriptional regulatory family.
  
     0.661
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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