STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msbA-3Lipid A export ATP-binding/permease protein MsbA. (626 aa)    
Predicted Functional Partners:
LT85_0343
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.710
LT85_0342
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.664
msbA-4
Lipid A export ATP-binding/permease protein MsbA.
  
 
0.632
LT85_0466
Type I secretion system ATPase; LssB family LapB.
   
 
0.613
lapB
Type I secretion system ATPase; LssB family LapB.
   
 
0.613
macA-2
Macrolide-specific efflux protein MacA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.611
LT85_3205
Siderophore biosynthesis non-ribosomal peptide synthetase modules.
  
 
 0.561
LT85_0341
Siderophore biosynthesis non-ribosomal peptide synthetase modules.
  
 
 0.542
LT85_3334
RND efflux system; Outer membrane lipoprotein CmeC.
       0.542
LT85_2123
TPR domain protein.
  
 0.516
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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