STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_3458L-arabinose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. (405 aa)    
Predicted Functional Partners:
araF
L-arabinose-binding periplasmic protein precursor AraF.
 
 0.993
araG
L-arabinose transport ATP-binding protein AraG.
  
 0.953
xylF
Xylose ABC transporter; Periplasmic xylose-binding protein XylF.
  
 0.813
xylG
D-xylose transport ATP-binding protein XylG; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.
  
 0.733
ytfQ
Putative sugar ABC transport system; Periplasmic binding protein YtfQ precursor.
  
 0.728
ytfR
Putative sugar ABC transport system; ATP-binding protein YtfR.
  
 0.712
xylF-2
Xylose ABC transporter; Periplasmic xylose-binding protein XylF.
  
 0.621
LT85_3456
Sugar transporter.
 
   
 0.582
LT85_1626
ABC-type sugar transport system; ATP-binding protein.
  
 0.581
rbsA-2
Ribose ABC transport system; ATP-binding protein RbsA.
  
 0.538
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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