STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_3463Alcohol dehydrogenase. (355 aa)    
Predicted Functional Partners:
LT85_2198
S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
    
0.928
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
    
 0.911
LT85_0030
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.906
LT85_0521
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.906
LT85_4356
Aldehyde dehydrogenase B.
  
 
 0.906
LT85_0355
Alcohol dehydrogenase.
  
  
 
0.904
LT85_2634
Alcohol dehydrogenase.
  
 
 0.732
LT85_0940
NADP-dependent malic enzyme; Belongs to the malic enzymes family.
  
  
 0.571
LT85_1489
NADP-dependent malic enzyme.
  
  
 0.571
LT85_0274
Putative dye-decolorizing peroxidase (DyP); YfeX-like subgroup.
   
  
 0.495
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.