STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_3510Putative transmembrane protein. (243 aa)    
Predicted Functional Partners:
LT85_3508
DNA-directed RNA polymerase specialized sigma subunit; Sigma24-like; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.962
LT85_3509
Putative transmembrane protein.
 
     0.949
cobD
Adenosylcobinamide-phosphate synthase; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
  
     0.682
LT85_3511
Putative transmembrane protein.
     
 0.645
LT85_3470
Cell division protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.641
LT85_4568
Putative PROLIN-rich signal peptide protein.
  
     0.618
LT85_4575
Histone acetyltransferase HPA2 -related acetyltransferase.
  
     0.607
LT85_1835
Putative transmembrane protein.
  
     0.571
LT85_4569
Putative PROLIN-rich signal peptide protein.
  
     0.570
LT85_0711
Dihydroneopterin triphosphate pyrophosphohydolase type 2.
  
     0.569
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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