STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_3699Glycosyltransferase. (552 aa)    
Predicted Functional Partners:
LT85_3697
Putative methyltransferase.
 
     0.893
LT85_3695
SAM-dependent methyltransferase.
 
     0.868
LT85_3696
O-antigen acetylase.
 
  
 0.804
LT85_3689
Glycosyltransferase.
 
     0.765
LT85_3698
Glycosyltransferase.
 
 
  
0.704
LT85_0960
Phosphoserine phosphatase.
  
  
 0.703
pslG
Extracellular Matrix protein PslG.
  
   
 0.647
LT85_3687
Glycosyltransferase.
 
     0.627
LT85_3694
UDP-glucose 4-epimerase.
 
  
 0.607
LT85_3688
Glycosyltransferase.
 
     0.575
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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