STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_3879Ferredoxin. (99 aa)    
Predicted Functional Partners:
LT85_3878
Hypothetical protein.
 
     0.888
LT85_3877
DNA-directed RNA polymerase specialized sigma subunit; Sigma24-like; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.720
LT85_4571
Indolepyruvate ferredoxin oxidoreductase; Alpha and beta subunits.
  
  
 0.609
LT85_3880
Hypothetical protein.
       0.531
ohbA
Ortho-halobenzoate 1,2-dioxygenase beta-ISP protein OhbA.
  
     0.501
LT85_0274
Putative dye-decolorizing peroxidase (DyP); YfeX-like subgroup.
     
 0.453
LT85_3230
Acetyltransferase; GNAT family.
  
     0.433
ohbB
Ortho-halobenzoate 1,2-dioxygenase alpha-ISP protein OhbB.
  
     0.410
LT85_0940
NADP-dependent malic enzyme; Belongs to the malic enzymes family.
     
 0.408
LT85_1489
NADP-dependent malic enzyme.
     
 0.408
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.