STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phnFTranscriptional regulator PhnF. (252 aa)    
Predicted Functional Partners:
LT85_4011
Hypothetical protein.
 
     0.813
LT85_4012
Ribulose-5-phosphate 4-epimerase-related epimerase and aldolase.
 
     0.803
LT85_4010
D-beta-hydroxybutyrate dehydrogenase.
 
     0.793
LT85_2552
Transcriptional regulator; GntR family.
  
  
 0.741
bioR
Putative biotin regulatory protein BioR (GntR family).
  
  
 0.698
LT85_1548
Transcriptional regulator; GntR family.
  
  
 0.653
LT85_0646
Transcriptional regulator; GntR family.
  
  
 0.556
LT85_4013
Nitrate/nitrite transporter.
 
     0.542
LT85_2902
Putative alkanesulfonate metabolism utilization regulator.
  
    0.531
LT85_2288
Transcriptional regulator; GntR family.
 
  
 0.489
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.