STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_4050Putative signal peptide protein. (131 aa)    
Predicted Functional Partners:
LT85_1500
Putative lipoprotein transmembrane.
  
     0.753
LT85_3156
Hypothetical protein.
  
     0.745
LT85_3998
Putative lipoprotein.
  
     0.740
LT85_3542
Hypothetical protein.
  
     0.734
LT85_4569
Putative PROLIN-rich signal peptide protein.
  
     0.715
LT85_3963
Outer membrane protein.
  
     0.691
LT85_0794
Hypothetical protein.
  
     0.689
LT85_1044
Putative inner membrane transmembrane protein.
  
     0.667
LT85_3526
Soluble lytic murein transglycosylase-related regulatory proteins.
  
     0.662
LT85_3509
Putative transmembrane protein.
  
     0.661
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.