STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_4536Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (326 aa)    
Predicted Functional Partners:
ybhD
LysR family transcriptional regulator YbhD; Belongs to the LysR transcriptional regulatory family.
  
     0.559
LT85_0839
Hydrogen peroxide-inducible genes activator; Belongs to the LysR transcriptional regulatory family.
  
     0.541
LT85_4535
NAD-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
   0.479
msbA-4
Lipid A export ATP-binding/permease protein MsbA.
       0.469
LT85_0556
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.453
LT85_4568
Putative PROLIN-rich signal peptide protein.
  
     0.451
LT85_0023
Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.450
gcvA-4
Glycine cleavage system transcriptional activator GcvA; Belongs to the LysR transcriptional regulatory family.
  
     0.427
LT85_3963
Outer membrane protein.
  
     0.424
LT85_4248
Cyn operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.418
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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