STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_4612General secretion pathway protein G. (138 aa)    
Predicted Functional Partners:
LT85_4608
General secretion pathway protein K.
 
 
 0.950
LT85_2244
Putative secretion system X protein GspG-like 2.
 
  
  0.948
LT85_4611
General secretion pathway protein H.
 
  
 0.941
LT85_2236
Putative secretion system X protein GspG-like 3.
  
  
 
0.908
LT85_4610
General secretion pathway protein I.
 
  
 0.908
LT85_2243
Putative secretion system X protein GspG-like.
    
  0.907
LT85_4602
General secretion pathway protein F.
 
  
 0.886
LT85_4603
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.872
LT85_4604
General secretion pathway protein D.
  
 0.871
LT85_4609
General secretion pathway protein J.
  
 
 0.868
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.