Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LT85_4635Putative signal peptide protein. (105 aa)    
Predicted Functional Partners:
LT85_1835
Putative transmembrane protein.
  
     0.695
LT85_0933
Putative transmembrane protein.
  
     0.654
LT85_2096
Putative transmembrane protein.
  
     0.538
LT85_0342
Malonyl CoA-acyl carrier protein transacylase.
  
  
 0.533
LT85_4996
Porin; Gram-negative type.
  
    0.528
LT85_0943
PE_PGRS family protein.
 
  
 0.525
tadD
Flp pilus assembly protein TadD; Contains TPR repeats.
 
    0.496
LT85_2765
PE_PGRS family protein.
 
  
 0.488
LT85_3102
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor.
  
  
 0.481
LT85_3509
Putative transmembrane protein.
  
     0.477
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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