STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_4797Alpha/beta hydrolase. (211 aa)    
Predicted Functional Partners:
LT85_4796
Ferredoxin.
       0.663
LT85_4798
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
     0.662
LT85_4795
Putative transmembrane protein.
 
     0.580
LT85_4731
Glutamate--cysteine ligase.
  
     0.567
LT85_4794
Putative lipoprotein.
       0.477
secB
Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
  
    0.469
LT85_3632
Histone acetyltransferase HPA2 -related acetyltransferase.
 
     0.466
LT85_4413
Protoporphyrinogen IX oxidase; 'novel form, HemJ'.
 
     0.451
LT85_4793
ABC-type transport system involved in resistance to organic solvents; Periplasmic component.
       0.423
LT85_4901
Hypothetical protein.
  
     0.406
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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