STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_4799Hypothetical protein. (309 aa)    
Predicted Functional Partners:
LT85_3346
Phospholipase C 4 precursor.
  
     0.716
LT85_2077
Hypothetical protein.
  
     0.611
LT85_0342
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.551
LT85_3758
Activator of 90 kDa heat shock protein ATPase.
  
     0.533
LT85_4800
Hypothetical protein.
       0.520
LT85_0996
Phage exonuclease.
  
     0.517
LT85_0439
Large tegument protein.
 
 
 0.447
LT85_1885
Hypothetical protein.
  
     0.446
LT85_1496
Putative thiol-disulfide isomerase and thioredoxin.
    
 
 0.445
dsbC-2
Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
  
    0.433
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.