STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_5005Hypothetical protein. (159 aa)    
Predicted Functional Partners:
LT85_5006
Type IV fimbrial biogenesis protein PilY1.
 
  
 0.945
LT85_5004
Hypothetical protein.
 
  
 0.939
pilE-3
Type IV pilus biogenesis protein PilE.
 
  
 0.916
LT85_4118
Type IV fimbrial biogenesis protein PilY1.
 
  
 0.834
LT85_4121
Hypothetical protein.
 
  
 0.833
fimT-2
Type IV fimbrial biogenesis protein FimT.
 
  
 0.765
pilW
Type IV fimbrial biogenesis protein PilW.
 
  
 0.723
LT85_4108
Type IV fimbrial biogenesis protein PilY1.
 
  
 0.697
fimT
Type IV fimbrial biogenesis protein FimT.
 
  
 0.676
pilE-2
Type IV pilus biogenesis protein PilE.
 
  
 0.659
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.