STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP02751.1Hypothetical protein. (680 aa)    
Predicted Functional Partners:
AMP02536.1
Hypothetical protein.
  
     0.774
AMP02656.1
NHL repeat family protein.
  
     0.773
AMP03742.1
Phosphoesterase family protein.
  
     0.772
AMP05721.1
Alginate lyase family protein.
  
     0.770
AMP05733.1
Hypothetical protein.
  
     0.763
AMP07046.1
exsB family protein.
 
     0.762
AMP02528.1
Alginate lyase family protein.
  
     0.759
AMP04603.1
Carbohydrate binding domain protein.
  
     0.754
AMP05068.1
Hypothetical protein.
  
     0.750
AMP03962.1
Polyketide cyclase / dehydrase and lipid transport family protein.
  
     0.699
Your Current Organism:
Collimonas pratensis
NCBI taxonomy Id: 279113
Other names: C. pratensis, CCUG 54728, Collimonas group D, Collimonas pratensis Hoppener-Ogawa et al. 2008, Collimonas sp. CTO 113, Collimonas sp. CTO 291, Collimonas sp. CTO 90, Collimonas sp. CTO 91, Collimonas sp. CTO 94, Collimonas sp. Ter113, Collimonas sp. Ter118, Collimonas sp. Ter227, Collimonas sp. Ter291, Collimonas sp. Ter90, Collimonas sp. Ter91, Collimonas sp. Ter94, LMG 23965, LMG:23965, strain Ter91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.