Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMP02765.1Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family. (296 aa)    
Predicted Functional Partners:
queH-2
Hypothetical protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).
       0.487
AMP02761.1
Cobalamin-independent synthase, Catalytic domain protein.
  
     0.467
metE
5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
  
     0.450
AMP02766.1
Periplasmic binding s and sugar binding domain of LacI family protein.
       0.425
Your Current Organism:
Collimonas pratensis
NCBI taxonomy Id: 279113
Other names: C. pratensis, CCUG 54728, Collimonas group D, Collimonas pratensis Hoppener-Ogawa et al. 2008, Collimonas sp. CTO 113, Collimonas sp. CTO 291, Collimonas sp. CTO 90, Collimonas sp. CTO 91, Collimonas sp. CTO 94, Collimonas sp. Ter113, Collimonas sp. Ter118, Collimonas sp. Ter227, Collimonas sp. Ter291, Collimonas sp. Ter90, Collimonas sp. Ter91, Collimonas sp. Ter94, LMG 23965, LMG:23965, strain Ter91
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