STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP03785.1Bacterial regulatory helix-turn-helix s, AraC family protein. (338 aa)    
Predicted Functional Partners:
AMP03817.1
Sarcosine oxidase, alpha subunit; Belongs to the GcvT family.
 
     0.708
soxD
Subunit delta of sarcosine oxidase.
 
    0.676
AMP02822.1
Bacterial regulatory helix-turn-helix s, AraC family protein.
  
   0.663
AMP03818.1
Sarcosine oxidase, gamma subunit.
 
    0.653
AMP03815.1
Sarcosine oxidase, beta subunit.
  
     0.630
AMP03789.1
NADH:flavin oxidoreductase / NADH oxidase family protein.
 
     0.613
AMP03793.1
Rieske [2Fe-2S] domain protein.
 
    0.590
AMP03792.1
Electron transfer flavodomain protein.
 
    0.585
AMP03788.1
V4R domain protein.
  
    0.555
AMP03057.1
Bacterial regulatory helix-turn-helix s, AraC family protein.
  
   0.553
Your Current Organism:
Collimonas pratensis
NCBI taxonomy Id: 279113
Other names: C. pratensis, CCUG 54728, Collimonas group D, Collimonas pratensis Hoppener-Ogawa et al. 2008, Collimonas sp. CTO 113, Collimonas sp. CTO 291, Collimonas sp. CTO 90, Collimonas sp. CTO 91, Collimonas sp. CTO 94, Collimonas sp. Ter113, Collimonas sp. Ter118, Collimonas sp. Ter227, Collimonas sp. Ter291, Collimonas sp. Ter90, Collimonas sp. Ter91, Collimonas sp. Ter94, LMG 23965, LMG:23965, strain Ter91
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.