STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP04048.1Anti sigma-E RseA, N-terminal domain protein. (204 aa)    
Predicted Functional Partners:
AMP04049.1
mucB/RseB family protein.
 
 
 0.997
AMP04050.1
Peptidase Do family protein; Belongs to the peptidase S1C family.
  
 
 0.887
rpoE
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.886
AMP03037.1
Hypothetical protein.
  
     0.738
AMP03170.1
Stringent starvation B family protein.
    
 
 0.723
AMP03005.1
Peptidase Do family protein; Belongs to the peptidase S1C family.
  
 
 0.705
AMP06391.1
Peptidase Do family protein; Belongs to the peptidase S1C family.
  
 
 0.705
AMP03164.1
RNA polymerase sigma factor, sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.689
AMP04757.1
RNA polymerase sigma factor, sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.689
AMP05634.1
RNA polymerase sigma factor, sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.689
Your Current Organism:
Collimonas pratensis
NCBI taxonomy Id: 279113
Other names: C. pratensis, CCUG 54728, Collimonas group D, Collimonas pratensis Hoppener-Ogawa et al. 2008, Collimonas sp. CTO 113, Collimonas sp. CTO 291, Collimonas sp. CTO 90, Collimonas sp. CTO 91, Collimonas sp. CTO 94, Collimonas sp. Ter113, Collimonas sp. Ter118, Collimonas sp. Ter227, Collimonas sp. Ter291, Collimonas sp. Ter90, Collimonas sp. Ter91, Collimonas sp. Ter94, LMG 23965, LMG:23965, strain Ter91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.