Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMP04384.1Peptidase propeptide and YPEB domain protein. (236 aa)    
Predicted Functional Partners:
AMP04383.1
Thermolysin metallopeptidase, catalytic domain protein; Extracellular zinc metalloprotease.
     0.991
AMP06387.1
Thermolabile hemolysin.
  
   
 0.694
AMP04316.1
Acetyltransferase family protein.
  
     0.686
AMP02797.1
Cupin domain protein.
  
     0.602
AMP04934.1
peptidase_C39 like family protein.
  
   
 0.601
AMP04385.1
Hypothetical protein.
       0.572
cbp
CBP21.
  
  
 0.544
AMP04025.1
Major Facilitator Superfamily protein.
  
     0.530
pcp-3
Pseudomonalisin.
  
     0.525
AMP05737.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
  
     0.485
Your Current Organism:
Collimonas pratensis
NCBI taxonomy Id: 279113
Other names: C. pratensis, CCUG 54728, Collimonas group D, Collimonas pratensis Hoppener-Ogawa et al. 2008, Collimonas sp. CTO 113, Collimonas sp. CTO 291, Collimonas sp. CTO 90, Collimonas sp. CTO 91, Collimonas sp. CTO 94, Collimonas sp. Ter113, Collimonas sp. Ter118, Collimonas sp. Ter227, Collimonas sp. Ter291, Collimonas sp. Ter90, Collimonas sp. Ter91, Collimonas sp. Ter94, LMG 23965, LMG:23965, strain Ter91
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