STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP05366.1Cohesin domain protein. (118 aa)    
Predicted Functional Partners:
AMP02929.1
Fimbrial assembly family protein.
  
 
 0.834
AMP02931.1
Pilus assembly, PilP family protein.
  
 
 0.830
AMP02928.1
Type IV pilus assembly PilM family protein.
  
 
 0.617
AMP06091.1
BON domain protein.
   
 
 0.617
AMP07395.1
lysM domain protein.
   
 
 0.617
AMP02930.1
Pilus assembly, PilO family protein.
  
 
 0.614
AMP05364.1
Prepilin-type N-terminal cleavage/methylation domain protein.
     
 0.583
AMP05365.1
Putative general secretion pathway protein G.
     
 0.583
AMP05368.1
Hypothetical protein.
  
 
 0.513
AMP05363.1
Putative type II secretory pathway, pseudopilin protein.
     
 0.491
Your Current Organism:
Collimonas pratensis
NCBI taxonomy Id: 279113
Other names: C. pratensis, CCUG 54728, Collimonas group D, Collimonas pratensis Hoppener-Ogawa et al. 2008, Collimonas sp. CTO 113, Collimonas sp. CTO 291, Collimonas sp. CTO 90, Collimonas sp. CTO 91, Collimonas sp. CTO 94, Collimonas sp. Ter113, Collimonas sp. Ter118, Collimonas sp. Ter227, Collimonas sp. Ter291, Collimonas sp. Ter90, Collimonas sp. Ter91, Collimonas sp. Ter94, LMG 23965, LMG:23965, strain Ter91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.