STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
AMP05536.1Dolichyl-phosphate-mannose-mannosyltransferase family protein. (588 aa)    
Predicted Functional Partners:
arnC
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase.
 
  
 0.975
AMP05542.1
Polysaccharide deacetylase family protein.
 
  
 0.970
AMP05537.1
Small Multidrug Resistance family protein.
 
  
 0.961
AMP05540.1
Formyl transferase, C-terminal domain protein.
 
  
 0.916
AMP05538.1
Aminotransferase class-V family protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.896
AMP05541.1
NAD dependent epimerase/dehydratase family protein.
 
  
 0.867
AMP05535.1
Hypothetical protein.
       0.803
AMP04816.1
Glycosyl transferase 2 family protein.
  
  
 0.671
AMP06896.1
Nucleotide sugar dehydrogenase family protein.
 
  
 0.495
AMP03127.1
Antimicrobial peptide resistance and lipid A acylation PagP family protein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.
  
   
 0.425
Your Current Organism:
Collimonas pratensis
NCBI taxonomy Id: 279113
Other names: C. pratensis, CCUG 54728, Collimonas group D, Collimonas pratensis Hoppener-Ogawa et al. 2008, Collimonas sp. CTO 113, Collimonas sp. CTO 291, Collimonas sp. CTO 90, Collimonas sp. CTO 91, Collimonas sp. CTO 94, Collimonas sp. Ter113, Collimonas sp. Ter118, Collimonas sp. Ter227, Collimonas sp. Ter291, Collimonas sp. Ter90, Collimonas sp. Ter91, Collimonas sp. Ter94, LMG 23965, LMG:23965, strain Ter91
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