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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP05538.1Aminotransferase class-V family protein; Belongs to the DegT/DnrJ/EryC1 family. (378 aa)    
Predicted Functional Partners:
AMP05541.1
NAD dependent epimerase/dehydratase family protein.
 
 
 0.987
AMP04923.1
Undecaprenyl-phosphate glucose phosphotransferase.
  
 0.967
AMP04237.1
Undecaprenyl-phosphate glucose phosphotransferase.
 
  
 0.961
arnC
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase.
 
  
 0.942
AMP05540.1
Formyl transferase, C-terminal domain protein.
 
  
 0.937
AMP05536.1
Dolichyl-phosphate-mannose-mannosyltransferase family protein.
 
  
 0.894
AMP05537.1
Small Multidrug Resistance family protein.
 
  
 0.894
AMP03339.1
Polysaccharide biosynthesis family protein.
 
  
 0.872
AMP05542.1
Polysaccharide deacetylase family protein.
 
  
 0.855
AMP06788.1
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
  
 0.839
Your Current Organism:
Collimonas pratensis
NCBI taxonomy Id: 279113
Other names: C. pratensis, CCUG 54728, Collimonas group D, Collimonas pratensis Hoppener-Ogawa et al. 2008, Collimonas sp. CTO 113, Collimonas sp. CTO 291, Collimonas sp. CTO 90, Collimonas sp. CTO 91, Collimonas sp. CTO 94, Collimonas sp. Ter113, Collimonas sp. Ter118, Collimonas sp. Ter227, Collimonas sp. Ter291, Collimonas sp. Ter90, Collimonas sp. Ter91, Collimonas sp. Ter94, LMG 23965, LMG:23965, strain Ter91
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