STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speGSpermidine N(1)-acetyltransferase. (178 aa)    
Predicted Functional Partners:
speE
Spermidine synthase domain protein; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
    
 0.917
AMP06595.1
Spermine/spermidine synthase family protein.
     
  0.900
AMP06273.1
acyl-CoA dehydrogenase, N-terminal domain protein.
       0.631
AMP03577.1
Acetyltransferase family protein.
  
   
 0.574
AMP03405.1
Acetyltransferase family protein.
 
   
 0.493
pvdA
FAD-NAD(P)-binding family protein.
 
  
 0.456
AMP07572.1
Amino acid adenylation domain protein.
  
  
 0.455
AMP02683.1
Pyridine nucleotide-disulfide oxidoreductase family protein.
 
  
 0.424
AMP04435.1
Type VII secretion system (T7SS), usher family protein.
  
 
   0.419
Your Current Organism:
Collimonas pratensis
NCBI taxonomy Id: 279113
Other names: C. pratensis, CCUG 54728, Collimonas group D, Collimonas pratensis Hoppener-Ogawa et al. 2008, Collimonas sp. CTO 113, Collimonas sp. CTO 291, Collimonas sp. CTO 90, Collimonas sp. CTO 91, Collimonas sp. CTO 94, Collimonas sp. Ter113, Collimonas sp. Ter118, Collimonas sp. Ter227, Collimonas sp. Ter291, Collimonas sp. Ter90, Collimonas sp. Ter91, Collimonas sp. Ter94, LMG 23965, LMG:23965, strain Ter91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.