STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP06491.1Glycine zipper family protein. (141 aa)    
Predicted Functional Partners:
AMP04583.1
Rubrerythrin family protein.
   
  
 0.541
AMP04513.1
Cytochrome c family protein.
  
 
 0.510
AMP06490.1
Hypothetical protein.
       0.466
AMP05087.1
Substrate binding domain of ABC-type glycine betaine transport system family protein.
  
    0.459
AMP05840.1
Substrate binding domain of ABC-type glycine betaine transport system family protein.
  
    0.459
AMP06492.1
Pyridine nucleotide-disulfide oxidoreductase family protein.
       0.445
bfr
Bacterioferritin; Iron-storage protein.
   
  
 0.434
AMP03952.1
Copper binding periplasmic CusF family protein.
   
    0.430
AMP04354.1
merR regulatory family protein.
   
    0.426
Your Current Organism:
Collimonas pratensis
NCBI taxonomy Id: 279113
Other names: C. pratensis, CCUG 54728, Collimonas group D, Collimonas pratensis Hoppener-Ogawa et al. 2008, Collimonas sp. CTO 113, Collimonas sp. CTO 291, Collimonas sp. CTO 90, Collimonas sp. CTO 91, Collimonas sp. CTO 94, Collimonas sp. Ter113, Collimonas sp. Ter118, Collimonas sp. Ter227, Collimonas sp. Ter291, Collimonas sp. Ter90, Collimonas sp. Ter91, Collimonas sp. Ter94, LMG 23965, LMG:23965, strain Ter91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.