STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_0174succinyl-CoA:(R)-citramalate CoA-transferase; Belongs to the CoA-transferase III family. (400 aa)    
Predicted Functional Partners:
Saro_0177
hydroxymethylglutaryl-CoA lyase.
 
  0.930
Saro_0173
Isochorismatase hydrolase.
 
  
 0.808
Saro_0175
5-oxoprolinase (ATP-hydrolyzing).
 
     0.808
Saro_0176
5-oxoprolinase (ATP-hydrolyzing).
 
     0.787
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
 
      0.694
Saro_0233
HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.543
Saro_0179
Transcriptional regulator, GntR family.
 
   
 0.516
Saro_0178
TonB-dependent receptor.
       0.428
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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