STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_0502Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (268 aa)    
Predicted Functional Partners:
Saro_0503
Ribonuclease II.
   
   0.684
Saro_0554
3-hydroxyacyl-CoA dehydrogenase.
 
 0.663
Saro_0512
Short-chain dehydrogenase/reductase SDR.
    
 0.605
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
      
 0.556
Saro_2627
Multi-sensor hybrid histidine kinase.
  
 
 0.545
Saro_0036
Histidine kinase.
   
 
 0.534
Saro_1231
Transcriptional regulator, LuxR family.
   
 
 0.534
Saro_0132
Long-chain acyl-CoA dehydrogenase.
 
 0.533
Saro_1000
acyl-CoA dehydrogenase-like protein.
 
 0.525
Saro_0999
acyl-CoA dehydrogenase-like protein.
 
 0.524
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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