STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_0599Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (312 aa)    
Predicted Functional Partners:
Saro_1646
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.740
Saro_0307
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.714
Saro_0600
Sterol desaturase-like protein.
 
     0.712
Saro_1501
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.711
Saro_0601
Sulfotransferase.
 
     0.689
Saro_0451
Transcriptional regulator, TetR family.
  
 
   0.620
Saro_1207
Twin-arginine translocation pathway signal.
  
     0.610
Saro_0249
Transcriptional regulator, TetR family.
  
 
   0.603
Saro_0569
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.596
Saro_0873
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.596
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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