Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Saro_0807Transcriptional regulator, XRE family. (506 aa)    
Predicted Functional Partners:
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
 
   
 0.618
Saro_0808
propionyl-CoA carboxylase carboxyltransferase subunit.
     
 0.595
Saro_1029
Isocitrate lyase.
 
   
 0.590
Saro_0811
methylmalonyl-CoA mutase.
     
 0.571
Saro_2032
Citrate synthase; Belongs to the citrate synthase family.
  
  
 0.521
Saro_0810
methylmalonyl-CoA epimerase.
       0.511
Saro_0809
Acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
     
 0.485
Saro_0070
Protein of unknown function DUF1275.
  
     0.455
Saro_1541
Transcriptional regulator, TetR family.
  
   
 0.435
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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