STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_0845Metal dependent phosphohydrolase. (429 aa)    
Predicted Functional Partners:
Saro_2481
Diguanylate cyclase.
 
 
 0.720
Saro_1983
Diguanylate cyclase/phosphodiesterase.
 
  
 0.705
Saro_2326
Diguanylate phosphodiesterase.
 
  
 0.701
Saro_1421
Diguanylate cyclase/phosphodiesterase.
 
  
 0.678
Saro_1403
Diguanylate cyclase/phosphodiesterase.
 
   
 0.675
Saro_1435
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
  
 0.667
Saro_2658
Diguanylate cyclase/phosphodiesterase.
 
  
 0.666
Saro_1031
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
  
 0.658
Saro_1106
Periplasmic sensor diguanylate cyclase/phosphodiesterase.
 
   
 0.650
Saro_2361
Flagellin-like protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
 
 0.635
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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