STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_1522Type II secretion system protein E. (467 aa)    
Predicted Functional Partners:
Saro_1523
Type II secretion system protein.
 
  
 0.969
Saro_1524
Type II secretion system protein.
 
  
 0.968
Saro_1521
Flp pilus assembly protein ATPase CpaE-like protein.
 
  
 0.962
Saro_1516
Type II and III secretion system protein; Belongs to the bacterial secretin family.
  
 0.935
Saro_1515
Flp pilus assembly CpaB.
 
  
 0.931
Saro_1076
Type II secretion system protein.
 
  
 0.871
Saro_1075
Type II secretion system protein.
 
  
 0.859
Saro_1080
Flp pilus assembly CpaB.
 
  
 0.841
Saro_1079
Type II and III secretion system protein; Belongs to the bacterial secretin family.
  
 0.832
Saro_1077
Response regulator receiver domain protein (CheY-like).
 
  
 0.817
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.