STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_1592Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)    
Predicted Functional Partners:
Saro_1591
Putative transmembrane transcriptional regulator (anti-sigma factor).
  
 
 0.910
Saro_2137
Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.782
Saro_1593
Peptidase S8 and S53, subtilisin, kexin, sedolisin.
 
  
 0.673
Saro_0488
Response regulator receiver domain protein (CheY-like).
 
  
 0.536
Saro_1232
Signal transduction histidine kinase.
 
  
 0.489
Saro_1395
Signal transduction histidine kinase.
 
  
 0.412
Saro_1594
Hypothetical protein.
       0.404
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.400
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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