STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_1593Peptidase S8 and S53, subtilisin, kexin, sedolisin. (396 aa)    
Predicted Functional Partners:
Saro_1592
Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.673
Saro_1591
Putative transmembrane transcriptional regulator (anti-sigma factor).
     
 0.649
Saro_3034
Hypothetical protein.
 
 
 0.638
Saro_1594
Hypothetical protein.
       0.589
Saro_0399
ATPase, E1-E2 type.
   
 0.437
Saro_2627
Multi-sensor hybrid histidine kinase.
  
  
 0.415
Saro_2397
Conserved hypothetical protein.
  
     0.411
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.