STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_1668Vanillin dehydrogenase; Belongs to the aldehyde dehydrogenase family. (466 aa)    
Predicted Functional Partners:
Saro_1679
Thiamine pyrophosphate enzyme-like TPP-binding protein; Belongs to the TPP enzyme family.
 
 0.916
Saro_2504
Alcohol dehydrogenase, zinc-containing.
 
 0.916
Saro_3057
Amidase.
   
 0.903
Saro_0538
Benzoate 1,2-dioxygenase, alpha subunit.
   
 
 0.901
Saro_1680
Ring hydroxylating dioxygenase, alpha subunit.
   
 
 0.901
Saro_0539
2-chlorobenzoate 1,2-dioxygenase.
     
 0.900
Saro_1669
Enoyl-CoA hydratase/isomerase.
 
 0.885
Saro_2819
2-pyrone-4,6-dicarboxylate hydrolase.
  
  
 0.827
Saro_2818
Methylitaconate delta2-delta3-isomerase.
   
 
  0.806
Saro_2436
4-hydroxybenzoate 3-monooxygenase.
  
 0.764
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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