STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_1689Cytochrome c, class I. (152 aa)    
Predicted Functional Partners:
Saro_1685
Amine dehydrogenase.
 
 
 0.958
Saro_1687
Conserved hypothetical protein.
 
 
   0.940
Saro_1688
Amine dehydrogenase; Methylamine dehydrogenase carries out the oxidation of methylamine. Electrons are passed from methylamine dehydrogenase to amicyanin; Belongs to the aromatic amine dehydrogenase light chain family.
 
     0.937
Saro_1690
Cytochrome c, class I.
  
  
 0.801
Saro_1686
Hypothetical protein.
       0.773
Saro_1691
TonB-dependent receptor.
       0.737
Saro_2578
Cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.688
Saro_0678
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.666
Saro_0918
Cytochrome c oxidase, subunit III.
  
 
 0.664
Saro_2577
Cytochrome c oxidase, cbb3-type, subunit II.
  
 
 0.656
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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