STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_1779Lytic transglycosylase, catalytic. (592 aa)    
Predicted Functional Partners:
Saro_1778
Molybdopterin binding domain; May be involved in the biosynthesis of molybdopterin. Belongs to the MoaB/Mog family.
       0.834
Saro_1780
Hypothetical protein.
   
   0.813
Saro_0900
Conserved hypothetical protein.
  
     0.683
Saro_1781
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
       0.682
Saro_0056
Peptidase M23B.
 
     0.679
Saro_1350
Histidine kinase A-like protein.
  
   
 0.662
Saro_1140
Hypothetical protein.
  
    0.659
Saro_1438
Conserved hypothetical protein.
 
     0.648
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
     
 0.627
Saro_2129
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
   
 0.589
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.