STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_1822Conserved hypothetical membrane protein. (427 aa)    
Predicted Functional Partners:
Saro_1823
TonB-dependent siderophore receptor.
 
  
 0.857
Saro_2949
Conserved hypothetical membrane protein.
  
     0.755
Saro_0345
TonB-dependent receptor.
 
   
 0.658
Saro_0754
TonB-dependent receptor.
 
   
 0.582
Saro_1820
Dimethylaniline monooxygenase (N-oxide forming).
  
    0.544
Saro_1821
Cytochrome P450.
       0.543
Saro_3280
TonB-dependent siderophore receptor.
 
  
 0.537
Saro_2950
TonB-dependent siderophore receptor.
 
  
 0.469
Saro_0864
TonB-dependent receptor.
 
   
 0.444
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.