STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_1868TonB-dependent receptor. (867 aa)    
Predicted Functional Partners:
Saro_1589
TonB-dependent receptor.
  
   
 0.716
Saro_1186
TonB-dependent receptor.
  
   
 0.699
Saro_1570
Conserved hypothetical protein.
  
     0.695
Saro_3280
TonB-dependent siderophore receptor.
  
  
 0.605
Saro_1867
Transcriptional regulator, AraC family.
 
     0.579
Saro_1869
2,4'-dihydroxyacetophenone dioxygenase.
       0.559
cysD
Sulfate adenylyltransferase subunit 2.
      
 0.556
Saro_1870
2,4'-dihydroxyacetophenone dioxygenase.
       0.504
Saro_1871
Hypothetical protein.
       0.503
Saro_1872
Rieske (2Fe-2S) protein.
       0.494
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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