Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Saro_1997UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. (1161 aa)    
Predicted Functional Partners:
Saro_1998
Helicase.
   
 0.981
Saro_2002
PAS/PAC sensor signal transduction histidine kinase.
 
    0.866
Saro_2001
Protein of unknown function UPF0079.
     
 0.855
Saro_1999
Nucleotidyl transferase.
       0.842
Saro_2000
Aminoglycoside phosphotransferase.
       0.842
Saro_2182
Hypothetical protein.
  
 
 0.815
Saro_2183
TrwC protein.
  
 
 0.815
Saro_1293
ATP-dependent DNA helicase, Rep family.
 
  
 0.813
Saro_2661
Recombinational DNA repair protein (RecF pathway)-like protein.
 
   
 0.752
Saro_1005
Protein of unknown function DUF1321.
  
     0.724
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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