STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_2012Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase. (281 aa)    
Predicted Functional Partners:
Saro_2013
Glutaredoxin, GrxC; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
 
 
 
 0.870
Saro_2011
Protein of unknown function DUF1178.
       0.834
Saro_0130
Putative GAF sensor protein.
 
      0.581
Saro_2014
Heat shock protein Hsp20; Belongs to the small heat shock protein (HSP20) family.
  
  
 0.549
Saro_3153
Porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family.
 
  
 0.506
Saro_2010
Septum formation initiator.
       0.434
Saro_2627
Multi-sensor hybrid histidine kinase.
  
 
 0.408
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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