STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_2120TPR repeat protein. (505 aa)    
Predicted Functional Partners:
Saro_2332
ATPase.
 
   
 0.796
Saro_2336
Polysaccharide export protein.
 
  
 0.791
Saro_2335
Lipopolysaccharide biosynthesis.
 
     0.788
Saro_2328
Hypothetical protein.
 
     0.787
Saro_2331
Polysaccharide deacetylase.
 
   
 0.784
Saro_3179
O-antigen polymerase.
 
   
 0.782
Saro_2048
Multi-sensor signal transduction histidine kinase.
 
   
 0.775
Saro_2329
Glycosyl transferase, group 1.
 
  
 0.773
Saro_2330
Conserved hypothetical protein.
 
     0.772
Saro_2049
Sugar transferase.
 
   
 0.731
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.