STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_2182Hypothetical protein. (261 aa)    
Predicted Functional Partners:
Saro_2183
TrwC protein.
     0.990
Saro_2184
Type IV secretory pathway VirD4 components-like protein.
   
 0.906
Saro_2167
Hypothetical protein.
 
   
 0.790
Saro_2168
TraH.
 
   
 0.790
Saro_2162
ATPase.
 
   
 0.785
Saro_1997
UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
  
 
 0.784
Saro_2169
TraG-like protein.
 
     0.784
Saro_2159
TraB pilus assembly.
 
     0.782
Saro_2198
ParB family protein; Belongs to the ParB family.
 
  
 0.778
Saro_2165
Type IV secretory pathway protease TraF-like protein.
 
     0.777
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.