STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_2219Conserved hypothetical protein. (363 aa)    
Predicted Functional Partners:
Saro_2220
Conserved hypothetical protein.
 
  
 0.965
Saro_2218
Protein of unknown function DUF1214.
 
     0.881
Saro_2217
Integral membrane protein-like protein.
       0.773
Saro_2502
Conserved hypothetical protein.
 
     0.742
Saro_1571
Conserved hypothetical protein.
  
     0.733
Saro_1531
AMP-dependent synthetase and ligase.
  
     0.723
Saro_1563
AMP-dependent synthetase and ligase.
  
     0.718
Saro_0570
Epoxide hydrolase N-terminal domain-like phosphatase.
  
     0.668
Saro_0282
acyl-CoA dehydrogenase-like protein.
  
     0.652
Saro_0281
Aminoglycoside phosphotransferase.
 
  
 0.649
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.