STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_2458TonB-dependent receptor. (758 aa)    
Predicted Functional Partners:
Saro_2457
Beta-lactamase-like protein.
       0.730
Saro_1186
TonB-dependent receptor.
  
   
 0.691
Saro_1589
TonB-dependent receptor.
  
   
 0.690
Saro_0866
TonB-dependent receptor.
  
  
 0.687
Saro_2969
Conserved hypothetical protein.
  
   
 0.485
Saro_1207
Twin-arginine translocation pathway signal.
  
     0.472
Saro_1548
TonB-dependent receptor.
  
  
 0.449
Saro_1570
Conserved hypothetical protein.
  
     0.449
Saro_0017
Outer membrane transport energization protein TonB; TC 2.C.1.1.1.
 
 
 0.442
Saro_0240
Hypothetical protein.
  
   
 0.429
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.