STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_2949Conserved hypothetical membrane protein. (337 aa)    
Predicted Functional Partners:
Saro_2950
TonB-dependent siderophore receptor.
 
  
 0.787
Saro_2948
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein.
       0.773
Saro_1822
Conserved hypothetical membrane protein.
  
     0.755
Saro_2951
Protein of unknown function DUF1624.
 
     0.532
Saro_2939
FAD dependent oxidoreductase.
       0.465
Saro_2940
BFD-like (2Fe-2S)-binding protein.
       0.465
Saro_2941
Conserved hypothetical protein.
       0.465
Saro_2942
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; Belongs to the ABC transporter superfamily.
       0.465
Saro_2943
Binding-protein-dependent transport systems inner membrane component.
       0.465
Saro_2944
Binding-protein-dependent transport systems inner membrane component.
       0.465
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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