STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_3051Negative regulator of AmpC, AmpD. (234 aa)    
Predicted Functional Partners:
Saro_3050
Conserved hypothetical protein.
 
     0.822
Saro_1917
Protein of unknown function DUF952.
 
      0.626
Saro_2000
Aminoglycoside phosphotransferase.
  
   
 0.575
Saro_1091
Beta-N-acetylhexosaminidase.
 
   
 0.564
Saro_3049
Metal-dependent protease of the PAD1/JAB1 superfamily-like protein.
  
    0.523
Saro_1999
Nucleotidyl transferase.
  
     0.521
Saro_1298
Major facilitator superfamily MFS_1.
 
   
 0.465
Saro_3046
Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
    0.402
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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