STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_3275UDP-galactose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (333 aa)    
Predicted Functional Partners:
Saro_0543
UTP-hexose-1-phosphate uridylyltransferase / UDP-glucose-hexose-1-phosphate uridylyltransferase; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family.
  
 0.974
Saro_0450
UDP-glucose pyrophosphorylase.
  
 0.938
Saro_0819
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
  
 0.920
Saro_3255
UDP-glucose 6-dehydrogenase.
  
 
 0.911
Saro_1618
UDP-galactose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
  
 
0.902
Saro_0544
Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
 
 0.798
Saro_0742
Mannose-1-phosphate guanylyltransferase (GDP).
 
  
 0.622
Saro_3276
Hypothetical protein.
       0.570
Saro_2628
Glycosyl transferase, family 2.
 
  
 0.512
Saro_3278
Peptidase M14, carboxypeptidase A.
  
  
 0.510
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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