STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG71771.1Ribose-phosphate pyrophosphokinase; Catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)    
Predicted Functional Partners:
KYG71976.1
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.990
KYG71310.1
Tungsten formylmethanofuran dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.990
KYG71418.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.990
KYG71141.1
Amidophosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.951
KYG81425.1
Ribose-5-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.947
rplY
50S ribosomal protein L25/general stress protein Ctc; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
  
  
 0.945
KYG71638.1
Pyruvate dehydrogenase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 0.944
KYG77026.1
Phosphoglucomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.940
KYG80985.1
2-oxoglutarate dehydrogenase subunit E1; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.937
KYG74863.1
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.927
Your Current Organism:
Roseivirga ehrenbergii
NCBI taxonomy Id: 279360
Other names: Flexibacteraceae bacterium KMM 6017, JCM 13514, KCTC 12282, KMM 6017, LMG 22567, LMG:22567, R. ehrenbergii, Roseivirga ehrenbergii Nedashkovskaya et al. 2005 emend. Hahnke et al. 2016, Roseivirga ehrenbergii Nedashkovskaya et al. 2005 emend. Nedashkovskaya et al. 2008
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