STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDA51467.1Protein of unknown function. (123 aa)    
Predicted Functional Partners:
SDA54899.1
Hypothetical protein.
 
     0.605
SDA54966.1
Cytochrome c oxidase subunit 3.
 
     0.604
SDA92673.1
Cytochrome c oxidase subunit 3.
 
     0.577
SDA39412.1
Hypothetical protein.
  
     0.572
SDA60138.1
Hypothetical protein.
  
     0.556
SDA51478.1
Hypothetical protein.
       0.538
SDA72771.1
Protein of unknown function.
  
     0.530
SDA55052.1
Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
     0.508
SDA91373.1
TonB-dependent Receptor Plug Domain.
  
     0.505
SDA92434.1
DNA-binding transcriptional regulator, MarR family.
  
     0.499
Your Current Organism:
Algoriphagus alkaliphilus
NCBI taxonomy Id: 279824
Other names: A. alkaliphilus, Algoriphagus alkaliphilus (Tiago et al. 2006) Nedashkovskaya et al. 2007 emend. Inan et al. 2015, CIP 108470, Chimaereicella alkaliphila, Chimaereicella alkaliphila Tiago et al. 2006, DSM 22703, LMG 22694, LMG:22694, Sphingobacterium sp. AC74, strain AC-74
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