STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDA59993.1Zinc carboxypeptidase. (581 aa)    
Predicted Functional Partners:
SDA59976.1
Zinc carboxypeptidase.
 
    
0.844
SDA60546.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
  
     0.605
SDA90792.1
Hypothetical protein.
  
     0.533
SDA55702.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
  
     0.528
SDA88161.1
C-terminal processing protease CtpA/Prc, contains a PDZ domain; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
     0.509
SDA59946.1
Kef-type K+ transport system, membrane component KefB.
  
    0.493
SDA70717.1
Sugar phosphate isomerase/epimerase.
  
     0.493
SDA59961.1
Nucleotide-binding universal stress protein, UspA family.
       0.488
SDA51054.1
Acetyltransferase (GNAT) domain-containing protein.
 
     0.481
SDA80527.1
Hypothetical protein.
  
     0.436
Your Current Organism:
Algoriphagus alkaliphilus
NCBI taxonomy Id: 279824
Other names: A. alkaliphilus, Algoriphagus alkaliphilus (Tiago et al. 2006) Nedashkovskaya et al. 2007 emend. Inan et al. 2015, CIP 108470, Chimaereicella alkaliphila, Chimaereicella alkaliphila Tiago et al. 2006, DSM 22703, LMG 22694, LMG:22694, Sphingobacterium sp. AC74, strain AC-74
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